Catacomb user reference
Catacomb is arranged into packages covering different problem areas.
The env packages contains the operating environment
and user interface. These are components which are not part of any
model.
The standard package
contains a wide range of general purpose objects, including color tables,
graphs and quantified lists.
The new workbench components can be
found in the same packages as the buttons on the workbench window.
- link Vector and spike connections, cords,
arrows and tubes.
- lab lab equipment.
- logic logic devices.
- drawing basic drawing shapes.
- world virtual environments and animats.
- network populations and projections.
- cell subcellular components.
The workbench components use objects from a number of other packages,
which also contain some standalone models:
- chemistry - Species, solutions and
reaction schemes
- diffusion - triangular meshes and
reaction-diffusion schemes
- cell - cells of various types
- channel - ion channels
- iaf - integrate and fire networks
- spatch - patch clamp simulation
- ratlab - rats in mazes
- star - stellar evolution