contents software data java models
Parameters used in simulations of Ca2+ spark formation and detection as shown in Fig 3.2.
Local calcium release from the SR
Parameter definition value unit iCa Amplitude of elemental Ca2+ release 2 pA F Faraday's constant 96500 C/mol Z Valence of Ca2+ ion 2
Diffusion of free CA2+ and fluo-3
Parameter definition value unit Dc Diffusion coefficient of free Ca2+ in cytosol 250 µm^2 s^-1 Db Diffusion coefficient of fluo-d and Ca2+-fluo-3 20(varied) µm^2 s^-1
Diffusion of free CA2+ and fluo-3
Parameter definition value unit vpump-max Maximum rate of Ca2+ reuptake 208 µM / s Kpump Michaelis constant 0.184 µM m Hill coefficient 3.9
Diffusion of free CA2+ and fluo-3
Parameter definition value unit FWHMz Axial full width at half-maximum 0.8 µm FWHMxy Lateral full width at half-maximum 0.8 µm
Miscellaneous
Parameter definition value unit [Ca2+]inf Intracellular free Ca2+ at rest 0.1 µM Modified from Smith, G.D., Keizer, J., Stern, M., Lederer, W.J., and Cheng, H.,, Biophys. J., 75, 15, 1998. with permission