| BranchedCell |
Instances of BranchedCell can be built
from scratch or imported. The editor allows moving, adding and removing
points, subdividing segments, and attaching an arbitrary set of clamps and
voltage recorders to points on the structure.
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| CFNetwork |
Continuous Firing Rate Networks CFNetwork have a series of nodes
representing groups of neurons and connections between them.
Node and connection types are added or modified with the controls on
the right. Those that have been defined are available in the main window
to be torn off and stuck together to construct networks.
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| HHChannel |
Ion channels following a Hodgkin-Huxley like formalism.
The equilibrium open fraction and time constants are shown for
each gate. They may be manipulated by dragging the curves, or
with the corresponding sliders. Any number of gates may
occur on a channel, and each gate can be raised to small integer powers
to indicate identical serial copies.
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| IaFNetwork |
Integrate and fire networks are composed of nodes and links,
where each node represents a population of cells with
the same properties, and each link represents a connectivity
rule. Profile or patterned (BinaryControl)
inputs may be attached to cell populations.
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| KSChannel |
Channels based on kinetic schemes, KSChannel, are
defined by the possible transitions between different states of the channel.
The state diagram can
be constructed by tearing off states or transitions and sticking
them together. The transitions rates may be constant or depend on the voltage,
or agent concentrations, and can be controlled with the corresponding
voltage dependence or binding curves.
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| KSStateView |
Stochastic simulation of a set of kineticScheme channels.
You can vary the membrane potential as the simulation is running and the
display shows how the state of each channel evolves. The total conductance
and voltage history are also shown.
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| NetView |
The results of running an integrate and fire network include the
timecourse of the potential at each of the recordable cells, the
connectivity of the network, and the strengths of all the synapses
through time. To help visualize this data it is packed in a NetView
object. The NetViewEditor lets you play through the data as a movie
and select cells and synapses to view in detail.
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| ReacDiff2Results |
Movie of the results of a reaction-diffusion calculation.
The data is interpolated onto the solution area in a choice of ways
from simply
filling polygons with the color value at the center to subdividing each
triangle into ten smaller triangles. Where more than one pool is present in
the reaction scheme, the one to display can be selected with the species
slider.
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| ReactionScheme |
A reaction scheme is composed of various pools
and the reactions between them, constructed by the usual tear-and-stick
process. Catalyzed reactions, and those of the form A+B -> C are
included as special cases. Others can be built up by linking pools
in an equation-like manner.
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| SteppedProfile |
Very much like the ProfileEditor with the additional possibility
of imposing independent incremental steps on any points in the
Profile.
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